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ObjectID : Conference/906
European Conference on Computational Biology
(Publications: 159) (Citation Count: 907) Year Range: 2002-2008
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Published Papers
Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities
- 2008
(Citations: 4)
Pei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence
ABSTRACT Motivation: Inference of latent chemical,species,in biochemical interaction networks,is a key problem,in estimation of the structure and parameters of the genetic, metabolic and protein interaction networks,that underpin,all biological processes.,We present,a framework,for Bayesian,marginalization,of these latent chemical species,through,Gaussian,process,...
Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining
- 2008
(Citations: 2)
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Shi Yu, Steven Van Vooren, Léon-charles Tranchevent, Bart De Moor, Yves Moreau
ABSTRACT Motivation: Computational,gene,prioritization methods,are useful to help,identify susceptibility genes,potentially being,involved,in genetic disease. Recently, text mining techniques have been applied to extract prior knowledge,from,text-based,genomic,information sources,and this knowledge,can be used,to improve,the prioritization process. However, the effect ...
Optimal spliced alignments of short sequence reads
- 2008
(Citations: 2)
Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch
Journal: BMC Bioinformatics
Annotation of metagenome short reads using proxygenes
- 2008
(Citations: 2)
Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz
Inter-species normalization of gene mentions with GNAT
- 2008
(Citations: 2)
Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez
A fast and flexible method for the segmentation of aCGH data
- 2008
(Citations: 1)
Erez Ben-yaacov, Yonina C. Eldar
Temporal logic patterns for querying dynamic models of cellular interaction networks
- 2008
(Citations: 2)
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Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde De Jong
Abstract: Models of the dynamics of cellular interaction networks have be- come increasingly larger in recent years. Formal verification based on model checking provides a powerful technology to keep up with this increase in scale and complexity. The application of model-checking approaches is hampered, however, by the difficulty for ...
SIRENE: supervised inference of regulatory networks
- 2008
(Citations: 3)
Fantine Mordelet, Jean-philippe Vert
Comprehensive in silico mutagenesis highlights functionally important residues in proteins
- 2008
(Citations: 2)
Yana Bromberg, Burkhard Rost
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites
- 2008
(Citations: 2)
Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton
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