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The DDLab Manual and Discrete Dynamics Lab software

The DDLab Manual and Discrete Dynamics Lab software,A. Wuensche

The DDLab Manual and Discrete Dynamics Lab software   (Citations: 2)
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Published in 2001.
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    • ...If it is assumed that mutations occur on a time scale that is much slower than rule iterations (e.g., as is the case in the computation of “metagraphs” in discrete dynamics lab [34]) then only the attractors are relevant...

    Burton Voorheeset al. Point Mutations and Transitions Between Cellular Automata Attractor Ba...

    • ...Based on computer simulations of cellular automata and random Boolean networks, using the authors software Discrete Dynamics Lab[23], this paper describes how basins of attraction might provide a conceptual framework for biomolecular networks...
    • ...Basins of attraction can be computed and portrayed[21, 22, 23], revealing the global dynamics on small networks...
    • ...time) ∞ows inward from garden-of-Eden states to the attractor, and then clockwise around the attractor cycle, as indicated in flgures 8 and 10. In the graphic convention[21, 23], the length of edges decreases with distance away from the attractor, and the diameter of the attractor cycle approaches an upper limit with increasing period...
    • ...In the software DDLab[23] there are \learning" algorithms that allow pre-images to be a automatically attached (learnt) or detached (forgotten) to/from a selected target state by mutations, moving wires or ∞ipping bits in rules[22]...
    • ...A random Boolean network’s order-chaos characteristics for varying C, applied especially for large networks, are captured by the measures illustrated in flgure 15, and described below[4, 6, 23]...
    • ...The simulations and flgures in this paper were made with DDLab (Discrete Dynamics Lab)[23]...

    Andrew Wuensche. A conceptual framework for biomolecular networks

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