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Keywords
(6)
Embryonic Stem Cell
Fluorescence Microscopy
Graph Mining
Image Representation
Average Precision
Stem Cell
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Automatic Embryonic Stem Cells Detection and Counting Method in Fluorescence Microscopy Images
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Automatic Embryonic Stem Cells Detection and Counting Method in Fluorescence Microscopy Images
(
Citations: 1
)
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Geisa Martins Faustino
,
Marcelo Gattass
,
Stevens Rehen
,
Carlos José Pereira de Lucena
In this paper, we propose an automatic
embryonic stem cell
detection and counting method for
fluorescence microscopy
images. We handle with pluripotent stem cells cultured in vitro. Our approach uses the luminance information to generate a graph-based image representation. Next, a
graph mining
process is used to detect the cells. The proposed method was extensively tested on a database of 92 images and specialists validated the results. We obtained an average precision, recall and F-measure of 93.97%, 92.04% and 92.87%, respectively.
Conference:
IEEE International Symposium on Biomedical Imaging
, pp. 799-802, 2009
DOI:
10.1109/ISBI.2009.5193170
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Citation Context
(1)
...In this section, we present the main steps of the proposed method for detecting and counting automatically embryonic stem cells grouped in embryoid bodies in fluorescence microscopy images. More details can be found in [
13
]...
Geisa Martins Faustino
,
et al.
Automatic Embryonic Stem Cells Detection and Counting Method in Fluore...
References
(13)
Fluorescent activated cell sorting (FACS): a rapid and reliable method to estimate the number of neurons in a mixed population
(
Citations: 27
)
Solène Sergent-Tanguy
,
Carine Chagneau
,
Isabelle Neveu
,
Philippe Naveilhan
Journal:
Journal of Neuroscience Methods - J NEUROSCI METH
, vol. 129, no. 1, pp. 73-79, 2003
Direct neural network application for automated cell recognition
(
Citations: 9
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Qing Zheng
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Bruce K. Milthorpe
,
Allan S. Jones
Journal:
Cytometry
, vol. 57A, no. 1, pp. 1-9, 2004
Detection of Biological Cells in Phase-Contrast Microscopy Images
(
Citations: 4
)
F. Ambriz-Colin
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M. Torres-Cisneros
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J. G. Avina-Cervantes
,
J. E. Saavedra-Martinez
,
O. Debeir
,
J. J. Sanchez-Mondragon
Conference:
Mexican International Conference on Artificial Intelligence - MICAI
, 2006
A Quantification Tool to Analyse Stained Cell Cultures
(
Citations: 2
)
Estelle Glory
,
A. Faure
,
Vannary Meas-yedid
,
Florence Cloppet
,
Christian Pinset
,
Georges Stamon
,
Jean-christophe Olivo-marin
Conference:
International Conference on Image Analysis and Recognition - ICIAR
, pp. 84-91, 2004
Combined Segmentation and Tracking of Neural Stem-Cells
(
Citations: 8
)
Karin Althoff
,
Johan Degerman
,
Tomas Gustavsson
Conference:
Scandinavian Conference on Image Analysis
, pp. 282-291, 2005
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Citations
(1)
Automatic Embryonic Stem Cells Detection and Counting Method in Fluorescence Microscopy Images
(
Citations: 1
)
Geisa Martins Faustino
,
Marcelo Gattass
,
Stevens Rehen
,
Carlos José Pereira de Lucena
Conference:
IEEE International Symposium on Biomedical Imaging
, pp. 799-802, 2009