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Data Integrity
Genetic Marker
Genetics
Graphic User Interface
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Genetic data analysis II
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PowerMarker: an integrated analysis environment for genetic marker analysis
PowerMarker: an integrated analysis environment for genetic marker analysis,10.1093/bioinformatics/bti282,Bioinformatics/computer Applications in The
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PowerMarker: an integrated analysis environment for genetic marker analysis
(
Citations: 329
)
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Kejun Liu
,
Spencer V. Muse
Summary: PowerMarker delivers a data-driven, integrated analysis environment (IAE) for genetic data. The IAE integrates data man- agement, analysis and visualization in a user-friendly graphical user interface. It accelerates the analysis lifecycle and enables users to maintain
data integrity
throughout the process. An ever-growing list of more than 50 different statistical analyses for genetic markers has been implemented in PowerMarker. Availability: www.powermarker.net
Journal:
Bioinformatics/computer Applications in The Biosciences - BIOINFORMATICS
, vol. 21, no. 9, pp. 2128-2129, 2005
DOI:
10.1093/bioinformatics/bti282
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www.bioinformatics.oupjournals.org
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www.informatik.uni-trier.de
)
Citation Context
(136)
...25 (
Liu & Muse 2005
) was used to export the data in binary format (allele presence = 1; allele absence = 0) for analysis with Numerical Taxonomy and Multivariate Analysis System (NTSYS-pc) version 2...
M. Mamunur Rahman
,
et al.
Molecular Characterization and Genetic Diversity Analysis of Rice (Ory...
... PowerMarker version 3.25
...
Candice N. Hansey
,
et al.
Maize (Zea mays L.) Genome Diversity as Revealed by RNA-Sequencing
...PowerMarker version 3.25 [
48
] was used to calculate the allele frequency based genetic distance between the market classes using the Rogers distance method [49] for the 244 genotypes with defined market classes...
John P Hamilton
,
et al.
Single nucleotide polymorphism discovery in elite north american potat...
...The rate ratio of non-synonymous to synonymous substitutions (dN/dS) was calculated according to the method introduced by Yang and Nielsen [
41
] implemented in the program YN00 of software package PAML v4.4c [38]...
...Polymorphic information content (PIC) was estimated using PowerMarker v3.0 [
41
], and 95% confidence intervals were calculated based on 10,000 bootstrap replications...
Yongle Li
,
et al.
High levels of nucleotide diversity and fast decline of linkage disequ...
...The software Cervus (Kalinowski et al. 2007) was used to estimate A, Ho, He, PIC, PI, and both versions of PE, and Powermarker (
Liu and Muse 2005
) was used to carry out an exact test for Hardy–Weinberg equilibrium for each microsatellite marker...
Danielle Assis Faria
,
et al.
Genotyping systems for Eucalyptus based on tetra-, penta-, and hexanuc...
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Citations
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Molecular Characterization and Genetic Diversity Analysis of Rice (Oryza sativa L.) Using SSR Markers
M. Mamunur Rahman
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Rajandeep S. Sekhon
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Natalia de Leon
,
Shawn M. Kaeppler
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C. Robin Buell
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(
Citations: 1
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Candice N Hansey
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Brett R Whitty
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Kevin Stoffel
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Alicia N Massa
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David S Douches
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BMC Genomics
, vol. 12, no. 1, pp. 1-12, 2011