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Taverna: lessons in creating a workflow environment for the life sciences

Taverna: lessons in creating a workflow environment for the life sciences,10.1002/cpe.993,Concurrency and Computation: Practice and Experience,Thomas

Taverna: lessons in creating a workflow environment for the life sciences   (Citations: 217)
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Thomas M. Oinn, R. Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole A. Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip W. Lordhttp://academic.research.microsoft.com/io.ashx?type=5&id=2493333&selfId1=0&selfId2=0&maxNumber=12&query=
Journal: Concurrency and Computation: Practice and Experience - CONCURRENCY , vol. 18, no. 10, pp. 1067-1100, 2006
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    • ...Bioinformatics is a fast-evolving field that encompasses molecular biology, biochemistry, computer science, mathematics and statistics ...

    Etienne Lordet al. Armadillo 1.1: An Original Workflow Platform for Designing and Conduct...

    • ...In order to choose a realistic range of workflow sizes, we first carried out a study of the SBS development platform Taverna[57],[87].Tavernaiswidelyusedinthedevelopment of scientific workflows in application domains, including bioinformatics, chemoinformatics, astronomy, and social sciences...

    Radu Calinescuet al. Dynamic QoS Management and Optimization in Service-Based Systems

    • ...We have extended the Taverna Workbench [4] into the caGrid Workflow Toolkit [5], a software suite for bioinformaticians to compose and coordinate caBIG services as well as third-party Web services...
    • ...In the area of scientific workflow, there are already many systems including Kepler [16], Taverna [4], Pegasus [17], and Swift [18]...

    Wei Tanet al. ServiceMap: Providing Map and GPS Assistance to Service Composition in...

    • ...We have extended the Taverna Workbench [4] into the caGrid Workflow Toolkit [5], a software suite for bioinformaticians to compose and coordinate caBIG services as well as third-party Web services...
    • ...In the area of scientific workflow, there are already many systems including Kepler [16], Taverna [4], Pegasus [17], and Swift [18]...

    Wei Tanet al. Providing Map and GPS Assistance to Service Composition in Bioinformat...

    • ...356 Fig. 1: (a) TavernaBio Workflow - Simplified version (original available in [14]) (b) EmbrapaBio Workflow - A nucleotide sequence comparison workflow (c) PartialTriana - Partial workflow from the one presented in [3]...
    • ...The workflow TavernaBio [14] is illustrated in Fig. 1a...
    • ...In our tests, we used 3 real scientific workflows illustrated in Fig. 1. The TavernaBio workflow [14] (Fig. 1a) has multiple starting points, eight processing steps and three output files; EmbrapaBio (Fig. 1b) was produced by Embrapa (Brazilian Agricultural Research Corporation) and it is used for comparing a large number of nucleotide sequences and PartialTriana (Fig. 1c) is a subset of the workflow presented in [3] and is composed of 11 ...

    Felipe Pontes Guimaraeset al. User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Gri...

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