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GeneGrid: A Practical Workflow Implementation for a Grid Based Virtual Bioinformatics Laboratory

GeneGrid: A Practical Workflow Implementation for a Grid Based Virtual Bioinformatics Laboratory,David R. Simpson,Noel Kelly,P. V. Jithesh,Paul Donach

GeneGrid: A Practical Workflow Implementation for a Grid Based Virtual Bioinformatics Laboratory   (Citations: 15)
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Bioinformatics needs solutions to capture and process genomic data, to assist diagnostic and therapeutic strategies. Industrial UK e-Science project, GeneGrid, harnesses GT3 Grid technology, to create a framework enabling the generation and analysis of genetic information from distributed sources. This paper presents the GeneGrid Workflow and Process Management (GWPM) component, the operational driver for the system, how it exploits a grid based architecture to meet the real life requirements, and some initial user results and experiences.
Published in 2004.
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    • ...A grid workflow management system often needs to deploy heterogeneous and distributed hardware and software systems to execute a given grid workflow [6,7,38]...
    • ...However, a complex scientific or business process normally changes often [6,7,38]...

    Jinjun Chenet al. A taxonomy of grid workflow verification and validation

    • ...It is supposed to support large-scale sophisticated scientific or business processes in a variety of complex e-science or e-business applications such as climate modelling, disaster recovery, medical surgery, high energy physics, or international stock market modelling [22, 30, 35, 40]...
    • ...The specifications normally contain a large number of computation and data intensive activities [2, 4, 35, 37]...

    Jinjun Chenet al. Temporal dependency based checkpoint selection for dynamic verificatio...

    • ... workflow system is a type of high-level grid middleware which is supposed to support modelling, redesign and execution of large-scale sophisticated e-science and e-business processes in many complex scientific and business applications such as climate modelling, astrophysics, international finance and insurance (Abramson, Kommineni, McGregor and Katzfey 2004, Foster, Kesselman and Tuecke 2002, Foster, Kesselman, Nick and Tuecke 2002, Simpson, ...
    • ...However, a complex e-science or e-business process is normally changing (Deelman, Blythe, Gil, Kesselman, Mehta and Vahi 2003, Simpson, Kelly, Jithesh, Donachy, Harmer, Perrott, Johnston, Kerr, McCurley and McKee 2004, Yu and Buyya 2005)...
    • ...A grid workflow system often needs to deploy heterogeneous and distributed hardware and software systems to execute a given grid workflow (Deelman, Blythe, Gil, Kesselman, Mehta and Vahi 2003, Simpson, Kelly, Jithesh, Donachy, Harmer, Perrott, Johnston, Kerr, McCurley and McKee 2004, Yu and Buyya 2005)...

    Jinjun Chenet al. Key research issues in grid workflow verification and validation

    • ...In the grid architecture, a grid workflow system is facilitated to support modelling, redesign and execution of large-scale sophisticated scientific and business processes [2, 14]...

    Jinjun Chenet al. Selecting Necessary and Sufficient Checkpoints for Dynamic Verificatio...

    • ...It is supposed to support modelling, redesign and execution of large-scale sophisticated e-science and e-business processes in many complex scientific and business applications such as climate modelling, astrophysics, international finance and insurance [1, 3, 17, 22]...
    • ...Refer to [7, 8, 10, 12, 22, 25] for more details...
    • ...Since in real-world grid workflow systems, grid workflows are normally very complicated and normally last a long time [1, 22]...

    Jinjun Chenet al. Dynamic Setting, Verification and Adjustment of Upper Bound Constraint...

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