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WordCloud: a Cytoscape plugin to create a visual semantic summary of networks

WordCloud: a Cytoscape plugin to create a visual semantic summary of networks,10.1186/1751-0473-6-7,Source Code for Biology and Medicine,Layla Oesper,

WordCloud: a Cytoscape plugin to create a visual semantic summary of networks  
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Background  When biological networks are studied, it is common to look for clusters, i.e. sets of nodes that are highly inter-connected. To understand the biological meaning of a cluster, the user usually has to sift through many textual annotations that are associated with biological entities. Findings  The WordCloud Cytoscape plugin generates a visual summary of these annotations by displaying them as a tag cloud, where more frequent words are displayed using a larger font size. Word co-occurrence in a phrase can be visualized by arranging words in clusters or as a network. Conclusions  WordCloud provides a concise visual summary of annotations which is helpful for network analysis and interpretation. WordCloud is freely available at http://baderlab.org/Software/WordCloudPlugin
Journal: Source Code for Biology and Medicine - Source Code Biol Med , vol. 6, no. 1, pp. 1-4, 2011
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