Sign in
Author
|
Conference
|
Journal
|
Organization
|
Year
|
DOI
Look for results that meet for the following criteria:
since
equal to
before
between
and
Search in all fields of study
Limit my searches in the following fields of study
Agriculture Science
Arts & Humanities
Biology
Chemistry
Computer Science
Economics & Business
Engineering
Environmental Sciences
Geosciences
Material Science
Mathematics
Medicine
Physics
Social Science
Multidisciplinary
Keywords
(12)
Distributed Computing System
Gene Expression
Gene Expression Regulation
Genetic Polymorphism
Genetics
Genome Scan
Linear Regression
Linkage Disequilibrium
Multiple Testing
Peripheral Blood
Permutation Test
Single Nucleotide Polymorphism
Subscribe
Academic
Publications
Discovering genetic polymorphism associated with gene expression levels across the whole genome
Discovering genetic polymorphism associated with gene expression levels across the whole genome,10.1109/IEMBS.2009.5334061,Athos Antoniades,Ioanna Kal
Edit
Discovering genetic polymorphism associated with gene expression levels across the whole genome
BibTex
|
RIS
|
RefWorks
Download
Athos Antoniades
,
Ioanna Kalvari
,
Constantinos Pattichis
,
Neil Jones
,
Paul M. Matthews
,
Enrico Domenici
,
Pierandrea Muglia
Genetic differences have been shown to contribute to
gene expression
variability. A complete evaluation of the associations between a whole
genome scan
with 550 k Single Nucleotide Polymorphisms (SNPs) and 54 k detectable expression levels (probesets) was performed on 176 human
peripheral blood
samples. The results are presented along with visualizations that reveal cis and trans
gene expression
regulatory effects. The algorithmic approach followed utilized a distributed computational system. The analysis was performed using a
linear regression
adjusting for all relevant covariates. Permutation testing on a random subset of the top results provided an indication of the significance levels adjusted for
multiple testing
and the non independence of SNPs due to linkage disequilibrium. The database of the produced results can be used as a resource to assess the functional impact of genetic polymorphisms to
gene expression
regulation. This resource is applicable across all disease areas.
Conference:
Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC
, pp. 5466-5469, 2009
DOI:
10.1109/IEMBS.2009.5334061
Cumulative
Annual
View Publication
The following links allow you to view full publications. These links are maintained by other sources not affiliated with Microsoft Academic Search.
(
ieeexplore.ieee.org
)
(
ieeexplore.ieee.org
)
References
(6)
Comprehensive Whole-Genome and Candidate Gene Analysis for Response to Statin Therapy in the Treating to New Targets (TNT) Cohort
(
Citations: 17
)
J. F. Thompson
,
C. L. Hyde
,
L. S. Wood
,
S. A. Paciga
,
D. A. Hinds
,
D. R. Cox
,
G. K. Hovingh
,
J. J. P. Kastelein
Journal:
Circulation-cardiovascular Genetics - CIRC-CARDIOVASC GENET
, vol. 2, no. 2, pp. 173-181, 2009
Allelic Variation in Human Gene Expression
(
Citations: 315
)
Hai Yan
,
Weishi Yuan
,
Victor E. Velculescu
,
Bert Vogelstein
,
Kenneth W. Kinzler
Journal:
Science
, vol. 297, no. 5584, pp. 1143-1143, 2002
Statistical significance for genomewide studies
(
Citations: 1939
)
John D. Storey
,
Robert Tibshirani
Journal:
Proceedings of The National Academy of Sciences - PNAS
, vol. 100, no. 16, pp. 9440-9445, 2003
Controlling the false discovery rate: a practical and powerful approach to multiple testing
(
Citations: 7148
)
Yoav Benjamini
,
Y. Hochberg
Published in 1995.
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
(
Citations: 4930
)
Michael Ashburner
,
Catherine A. Ball
,
Judith A. Blake
,
David Botstein
,
A P Davis
,
J T Eppig
,
M A Harris
,
D P Hill
,
J E Richardson
,
M Ringwald
Published in 2000.